STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vraRTwo component transcriptional regulator TcsR; Function of homologous gene experimentally demonstrated in an other organism; enzyme;Peptidyl-prolyl cis-trans isomerase (Fragment 1). (209 aa)    
Predicted Functional Partners:
vraS
Sensor histidine kinase VraS; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.997
yjbB
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.872
SCA92056.1
Conserved hypothetical protein (contaning a signal transduction histidine kinase); Homologs of previously reported genes of unknown function.
 
 
 0.858
AguR
Agmatine catabolism transcriptional regulator; Homologs of previously reported genes of unknown function.
  
     0.719
SCA92057.1
Conserved membrane hypothetical protein (containing PDZ domains); Homologs of previously reported genes of unknown function.
  
 
 0.606
SCA92078.1
Putative 5-bromo-4-chloroindolyl phosphate hydrolysis protein; Homologs of previously reported genes of unknown function.
  
     0.567
bseS
Putative Sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.528
gltB-2
Glutamate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.514
ytoI
Conserved hypothetical protein (containing a DRTGG domain); Homologs of previously reported genes of unknown function.
 
     0.498
arlS
Putative two component signal transduction histidine-protein kinase ArlS; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.497
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.