STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCA92479.1Putative Transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (289 aa)    
Predicted Functional Partners:
xylR2
Putative Msm operon regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.758
lacR
Putative Msm operon regulatory protein (MsmR); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.752
SCA92373.1
Conserved hypothetical protein (containing a DNA binding HTH domain, AraC-type domain); Homologs of previously reported genes of unknown function.
  
     0.704
ycjS
Putative oxidoreductase, NADH-binding; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.584
yfiH
Putative Inosose isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.547
amyD
Putative starch degradation products transport system permease protein AmyD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
     
 0.540
amyC
Potential starch degradation products transport system permease protein AmyC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
     
 0.536
rpoA
RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.504
thuA
Conserved hypothetical protein (possibilite Trehalose utilization protein); Homologs of previously reported genes of unknown function.
 
     0.486
SCA92177.1
Putative Transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
  
0.438
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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