STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmrDUncharacterized ABC transporter (ATP-binding protein TM_0288); Function of strongly homologous gene; transporter. (634 aa)    
Predicted Functional Partners:
SCA92499.1
Putative maltose and maltodextrin ABC transporter subunit (ATP-binding protein)(malQ, yfiB); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
0.991
MetN
Methionine import ATP-binding protein MetN 1; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
 
     
0.711
SCA92795.1
Putative ABC-type multidrug transport system, ATPase and permease components; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
0.597
SCA92648.1
Putative ABC-type multidrug transport system, ATPase and permease components; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
0.585
yfiB
Permease protein, ABC-type transport system, multidrug-family ATP-binding; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
0.583
SCA92776.1
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
  
0.567
SCA91846.1
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
  
0.556
SCA92863.1
Transport/processing ATP-binding protein, ABC-type bacteriocin transporter (mesD, lcnC, comA); Function of strongly homologous gene; transporter.
 
 
  
0.538
dnaK
Chaperone Hsp70, co-chaperone with DnaJ; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.446
SCA92500.1
Putative cation efflux transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
  
  
 0.446
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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