STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCA92625.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the CvfB family. (287 aa)    
Predicted Functional Partners:
SCA92623.1
Conserved hypothetical protein, YozE-like domain; Homologs of previously reported genes of unknown function; Belongs to the UPF0346 family.
 
   
 0.829
msrA2
Peptide methionine sulfoxide reductase MsrA 2; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.798
phzF
Putative epimerase phenazine biosynthesis protein PhzF like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.594
rpoE
DNA-directed RNA polymerase subunit delta protein; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
  
    0.542
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
  
    0.523
ppaC
Manganese-dependent inorganic pyrophosphatase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
     0.415
SCA91680.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.402
ybeC
Putative anti-sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the UPF0473 family.
 
     0.400
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.