STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCA92659.1Conserved hypothetical protein, transcription regulator domain; Homologs of previously reported genes of unknown function; Belongs to the LysR transcriptional regulatory family. (301 aa)    
Predicted Functional Partners:
mleR
Malolactic fermentation system transcriptional activator; Function experimentally demonstrated in the studied genus; regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.584
yjbR
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.572
SCA92658.1
Putative transcriptional regulator, Helix-turn-helix domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
  
 0.546
SCA92661.1
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
    0.541
mleR-2
Malolactic fermentation system transcriptional activator; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.532
gltB-2
Glutamate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.500
SCA92662.1
Hypothetical protein; No homology to any previously reported sequences.
       0.423
metN
DL-methionine transporter subunit; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
  
  
 0.415
SCA91909.1
Putative methyl-tetrahydrofolate methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.413
metI
DL-methionine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
    0.401
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.