STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aguDPutative glutamate:gamma-aminobutyric acid antiporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (455 aa)    
Predicted Functional Partners:
aguA-2
Agmatine deiminase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.941
ptcA
Putrescine carbamoyltransferase; Function of strongly homologous gene; enzyme; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
  
 0.889
arcC
Carbamate kinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the carbamate kinase family.
  
  
 0.797
apu
Putative Amylopullulanase (Includes: Alpha-amylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 0.609
gtfA
Sucrose phosphorylase / GH13, similar to LACPI-1289 from L. piscium MKFS47; Function of strongly homologous gene; enzyme.
   
 0.609
mdxD
Neopullulanase / CBM34, GH13, similar to LACPI-1399 from L. piscium MKFS47; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.609
dexB
Glucan 1,6-alpha-glucosidase / GH13, similar to LACPI-1446 from L. piscium MKFS47; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.609
malL
Oligo-1,6-glucosidase / GH13, similar to LACPI-1484 from L. piscium MKFS47; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.609
treA
trehalose-6-P hydrolase / GH13, similar to LACPI-1657 from L. piscium MKFS47; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.609
AguR
Agmatine catabolism transcriptional regulator; Homologs of previously reported genes of unknown function.
 
   
 0.499
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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