STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AguRAgmatine catabolism transcriptional regulator; Homologs of previously reported genes of unknown function. (338 aa)    
Predicted Functional Partners:
vraS
Sensor histidine kinase VraS; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.874
SCA92056.1
Conserved hypothetical protein (contaning a signal transduction histidine kinase); Homologs of previously reported genes of unknown function.
  
 
 0.839
vraR
Two component transcriptional regulator TcsR; Function of homologous gene experimentally demonstrated in an other organism; enzyme;Peptidyl-prolyl cis-trans isomerase (Fragment 1).
  
     0.719
SCA92057.1
Conserved membrane hypothetical protein (containing PDZ domains); Homologs of previously reported genes of unknown function.
  
 
 0.600
SCA92055.1
Putative two-component system response regulator containing LuxR, C-terminal domain (vraR, luxR); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.588
ptcA
Putrescine carbamoyltransferase; Function of strongly homologous gene; enzyme; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
     
 0.546
yjbB
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.520
aguD
Putative glutamate:gamma-aminobutyric acid antiporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   
 0.499
rsmB
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.468
ytoI
Conserved hypothetical protein (containing a DRTGG domain); Homologs of previously reported genes of unknown function.
  
     0.448
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.