STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCA92931.1Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. (104 aa)    
Predicted Functional Partners:
SCA92929.1
Putative tRNA binding domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.779
SCA92930.1
Thioredoxin-like protein YtpP; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.779
ssb-2
Single-stranded DNA-binding protein 1; Function of homologous gene experimentally demonstrated in an other organism; factor.
       0.603
pepA
Glutamyl aminopeptidase; Function experimentally demonstrated in the studied genus; enzyme.
       0.531
SCA92927.1
Putative cysteine, histidine-dependent amidohydrolase/peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.465
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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