STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCA92938.1Converved membrane hypothetical protein; Homologs of previously reported genes of unknown function. (529 aa)    
Predicted Functional Partners:
SCA92936.1
Glycosyltransferase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.856
SCA92937.1
Putative Glycosyl transferase / GT2, similar to LACPI-2187 from L. piscium MKFS47; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.830
SCA92939.1
Conserved hypothetical protein containing Lipopolysaccharide biosynthesis domain; Homologs of previously reported genes of unknown function.
 
   
 0.789
SCA92942.1
Putative O-antigen export system permease protein RfbA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.777
SCA92941.1
Putative O-antigen export system ATP-binding protein RfbB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.737
SCA92935.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
     
 0.613
rgpB
Putative glycosyl transferase / GT2, similar to LACPI-2195 from L. piscium MKFS47; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.589
SCA92944.1
Putative glycosyl transferase / GT4, similar to LACPI-2196 from L. piscium MKFS47; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.504
SCA92940.1
Conserved hypothetical protein containing glycosyltransferase domain; Homologs of previously reported genes of unknown function.
       0.479
adcR
Transcriptional repressor AdcR; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
     0.423
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.