STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCA92939.1Conserved hypothetical protein containing Lipopolysaccharide biosynthesis domain; Homologs of previously reported genes of unknown function. (599 aa)    
Predicted Functional Partners:
SCA92942.1
Putative O-antigen export system permease protein RfbA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   
 0.960
rgpB
Putative glycosyl transferase / GT2, similar to LACPI-2195 from L. piscium MKFS47; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.906
SCA92941.1
Putative O-antigen export system ATP-binding protein RfbB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   
 0.899
SCA92944.1
Putative glycosyl transferase / GT4, similar to LACPI-2196 from L. piscium MKFS47; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.880
SCA92937.1
Putative Glycosyl transferase / GT2, similar to LACPI-2187 from L. piscium MKFS47; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.804
SCA92940.1
Conserved hypothetical protein containing glycosyltransferase domain; Homologs of previously reported genes of unknown function.
  
  
 0.801
SCA92938.1
Converved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.789
yacG
Conserved hypothetical protein containing Beta-lactamase A domain; Homologs of previously reported genes of unknown function.
  
     0.760
gadR
Transcriptional regulator, Rgg/GadR/MutR family; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
     0.706
xerD
Tyrosine recombinase XerD-like; Function of strongly homologous gene; enzyme; Belongs to the 'phage' integrase family.
  
     0.692
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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