STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCX56544.1Hypothetical protein. (156 aa)    
Predicted Functional Partners:
SCX56550.1
Hypothetical protein.
       0.773
SCX56556.1
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase.
       0.773
SCX56539.1
Protein of unknown function.
       0.586
dksA-2
Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
       0.521
SCX56564.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
       0.498
SCX56525.1
Hypothetical protein.
       0.409
Your Current Organism:
Nitrosospira sp. Nsp1
NCBI taxonomy Id: 136547
Other names: N. sp. Nsp1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.