STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W6Q9K8_PENRFDNA repair metallo-beta-lactamase. (725 aa)    
Predicted Functional Partners:
W6Q6X7_PENRF
YTH domain.
    
 0.997
ku70
ATP-dependent DNA helicase II subunit 1.
   
 0.971
ku80
ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.
    
 0.971
cft1
Protein cft1.
   
 0.951
W6Q9L3_PENRF
DUF3453 domain-containing protein.
   
 0.941
pla1
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
    
 0.927
lig4
DNA ligase.
   
 0.898
W6QM72_PENRF
WD40/YVTN repeat-like-containing domain.
    
 0.895
W6R1B6_PENRF
ENTH/VHS.
    
 0.893
ssu72
RNA polymerase II subunit A C-terminal domain phosphatase ssu72.
   
 0.891
Your Current Organism:
Penicillium roqueforti
NCBI taxonomy Id: 1365484
Other names: P. roqueforti FM164, Penicillium roqueforti FM164
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.