STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN05428963_103324Uncharacterized membrane protein YckC, RDD family. (154 aa)    
Predicted Functional Partners:
SAMN05428963_1132
Heat shock protein Hsp15.
  
    0.766
SAMN05428963_102314
Uncharacterized protein.
  
     0.753
SAMN05428963_106247
Uncharacterized protein.
  
     0.682
SAMN05428963_10117
AsmA family protein.
  
     0.676
SAMN05428963_10539
LapA_dom domain-containing protein.
  
     0.673
SAMN05428963_103326
Uncharacterized protein.
 
     0.668
SAMN05428963_103373
Apolipoprotein A1/A4/E domain-containing protein.
  
     0.661
SAMN05428963_106233
Flagellar export protein FliJ.
  
     0.652
SAMN05428963_10188
Uncharacterized conserved protein, contains Zn-finger domain.
  
   
 0.641
SAMN05428963_102333
Invasion protein IalB, involved in pathogenesis.
  
     0.632
Your Current Organism:
Consotaella salsifontis
NCBI taxonomy Id: 1365950
Other names: Aurantimonas sp. USBA 369, C. salsifontis, CMPUJ U369, Consotaella salsifontis Diaz-Cardenas et al. 2017, KCTC 22549, strain USBA 369
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.