Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SAMN05428963_103361 | SAMN05428963_108131 | SAMN05428963_103361 | SAMN05428963_108131 | Phospho-2-dehydro-3-deoxyheptonate aldolase. | Prephenate dehydratase. | 0.576 |
SAMN05428963_103361 | aroB | SAMN05428963_103361 | SAMN05428963_105137 | Phospho-2-dehydro-3-deoxyheptonate aldolase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.815 |
SAMN05428963_103361 | aroE | SAMN05428963_103361 | SAMN05428963_11925 | Phospho-2-dehydro-3-deoxyheptonate aldolase. | Shikimate dehydrogenase (NADP(+)); Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.527 |
SAMN05428963_103361 | aroK | SAMN05428963_103361 | SAMN05428963_105136 | Phospho-2-dehydro-3-deoxyheptonate aldolase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.734 |
SAMN05428963_105138 | aroB | SAMN05428963_105138 | SAMN05428963_105137 | Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.809 |
SAMN05428963_105138 | aroK | SAMN05428963_105138 | SAMN05428963_105136 | Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.809 |
SAMN05428963_107193 | SAMN05428963_108131 | SAMN05428963_107193 | SAMN05428963_108131 | Prephenate dehydrogenase. | Prephenate dehydratase. | 0.903 |
SAMN05428963_107193 | aroA | SAMN05428963_107193 | SAMN05428963_105318 | Prephenate dehydrogenase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.995 |
SAMN05428963_107193 | aroB | SAMN05428963_107193 | SAMN05428963_105137 | Prephenate dehydrogenase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.835 |
SAMN05428963_107193 | aroC | SAMN05428963_107193 | SAMN05428963_102344 | Prephenate dehydrogenase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.971 |
SAMN05428963_107193 | aroE | SAMN05428963_107193 | SAMN05428963_11925 | Prephenate dehydrogenase. | Shikimate dehydrogenase (NADP(+)); Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.740 |
SAMN05428963_107193 | aroK | SAMN05428963_107193 | SAMN05428963_105136 | Prephenate dehydrogenase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.868 |
SAMN05428963_107193 | aroQ | SAMN05428963_107193 | SAMN05428963_103241 | Prephenate dehydrogenase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.453 |
SAMN05428963_107193 | cmk | SAMN05428963_107193 | SAMN05428963_105317 | Prephenate dehydrogenase. | Cytidylate kinase. | 0.907 |
SAMN05428963_108131 | SAMN05428963_103361 | SAMN05428963_108131 | SAMN05428963_103361 | Prephenate dehydratase. | Phospho-2-dehydro-3-deoxyheptonate aldolase. | 0.576 |
SAMN05428963_108131 | SAMN05428963_107193 | SAMN05428963_108131 | SAMN05428963_107193 | Prephenate dehydratase. | Prephenate dehydrogenase. | 0.903 |
SAMN05428963_108131 | aroA | SAMN05428963_108131 | SAMN05428963_105318 | Prephenate dehydratase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.825 |
SAMN05428963_108131 | aroB | SAMN05428963_108131 | SAMN05428963_105137 | Prephenate dehydratase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.867 |
SAMN05428963_108131 | aroC | SAMN05428963_108131 | SAMN05428963_102344 | Prephenate dehydratase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.878 |
SAMN05428963_108131 | aroE | SAMN05428963_108131 | SAMN05428963_11925 | Prephenate dehydratase. | Shikimate dehydrogenase (NADP(+)); Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.882 |
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