STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN05428963_10713Uncharacterized protein. (73 aa)    
Predicted Functional Partners:
SAMN05428963_1079
Type IV secretion system protein TrbL.
 
     0.906
SAMN05428963_1077
P-type conjugative transfer protein TrbJ.
 
     0.905
SAMN05428963_10710
Type IV secretion system protein VirB5.
 
     0.896
SAMN05428963_10712
Type IV secretion system protein VirB10.
 
     0.894
SAMN05428963_10711
Type IV secretion system protein VirB9.
 
     0.889
SAMN05428963_1078
Conjugative transfer region protein TrbK.
 
     0.856
SAMN05428963_1075
Type IV secretion system protein VirB3.
 
     0.798
SAMN05428963_104346
Type IV secretion system protein TrbL.
 
     0.771
SAMN05428963_1223
annotation not available
 
     0.771
SAMN05428963_1273
annotation not available
 
     0.771
Your Current Organism:
Consotaella salsifontis
NCBI taxonomy Id: 1365950
Other names: Aurantimonas sp. USBA 369, C. salsifontis, CMPUJ U369, Consotaella salsifontis Diaz-Cardenas et al. 2017, KCTC 22549, strain USBA 369
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.