STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN05428963_12233Regulator of RNase E activity RraA. (223 aa)    
Predicted Functional Partners:
SAMN05428963_12234
Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family; Belongs to the LDH2/MDH2 oxidoreductase family.
 
  
  0.841
SAMN05428963_104299
4-hydroxy-4-methyl-2-oxoglutarate aldolase; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions.
  
  
0.786
SAMN05428963_103366
Malate dehydrogenase (Oxaloacetate-decarboxylating)(NADP+).
     
 0.740
SAMN05428963_101288
Oxaloacetate decarboxylase, alpha subunit.
     
 0.720
SAMN05428963_11859
Regulator of RNase E activity RraA.
  
  
 
0.719
SAMN05428963_102248
Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
    
 0.629
SAMN05428963_104205
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.618
SAMN05428963_104215
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
    
  0.605
SAMN05428963_106118
Arabinose-5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily.
    
  0.572
SAMN05428963_101230
2-keto-4-pentenoate hydratase.
    
 0.551
Your Current Organism:
Consotaella salsifontis
NCBI taxonomy Id: 1365950
Other names: Aurantimonas sp. USBA 369, C. salsifontis, CMPUJ U369, Consotaella salsifontis Diaz-Cardenas et al. 2017, KCTC 22549, strain USBA 369
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