STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYL99_11522HTH La-type RNA-binding domain-containing protein. (1185 aa)    
Predicted Functional Partners:
AYL99_02206
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 
 0.807
AYL99_01895
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.
   
 
 0.748
AYL99_03479
Centromere/microtubule-binding protein cbf5.
   
 
 0.726
AYL99_00120
Uncharacterized protein.
   
 
 0.667
AYL99_00968
Uncharacterized protein.
   
 
 0.667
AYL99_01015
MIF4G domain-containing protein.
   
 
 0.667
AYL99_10914
Uncharacterized protein.
   
 
 0.630
AYL99_04760
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
   0.609
AYL99_04332
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
   
 
 0.593
AYL99_02309
tRNA pseudouridine(55) synthase.
   
 
 0.585
Your Current Organism:
Fonsecaea erecta
NCBI taxonomy Id: 1367422
Other names: F. erecta, Fonsecaea erecta V. A. Vicente, Najafzadeh, Sun & de Hoog 2013, Fonsecaea sp. RG-2013a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.