STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYL99_09805Casein kinase 1; Belongs to the protein kinase superfamily. (318 aa)    
Predicted Functional Partners:
AYL99_03386
Uncharacterized protein.
    
 0.929
AYL99_05165
Uncharacterized protein.
    
 0.889
AYL99_02214
RIO domain-containing protein.
    
 0.879
AYL99_02964
Serine/threonine-protein kinase.
  
 0.862
AYL99_10320
Bms1-type G domain-containing protein.
    
 0.840
AYL99_03854
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
    
 0.820
AYL99_07185
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 0.797
AYL99_09091
Glycogen synthase kinase-3 beta; Belongs to the protein kinase superfamily.
  
 
0.757
AYL99_04334
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.748
AYL99_07581
40S ribosomal protein S20.
    
 0.734
Your Current Organism:
Fonsecaea erecta
NCBI taxonomy Id: 1367422
Other names: F. erecta, Fonsecaea erecta V. A. Vicente, Najafzadeh, Sun & de Hoog 2013, Fonsecaea sp. RG-2013a
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