STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYL99_06530tRNA pseudouridine(38-40) synthase. (667 aa)    
Predicted Functional Partners:
AYL99_02309
tRNA pseudouridine(55) synthase.
   
 0.879
AYL99_03332
Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.873
AYL99_03479
Centromere/microtubule-binding protein cbf5.
   
 0.846
AYL99_02203
DNA-directed RNA polymerase II subunit C.
  
  
 0.834
AYL99_02753
RPOLD domain-containing protein.
  
  
 0.834
TRM82
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.818
AYL99_11318
Uncharacterized protein.
   
    0.813
AYL99_10914
Uncharacterized protein.
  
   0.805
AYL99_00225
Uncharacterized protein.
   
    0.781
AYL99_00214
TRUD domain-containing protein.
   
 
 0.776
Your Current Organism:
Fonsecaea erecta
NCBI taxonomy Id: 1367422
Other names: F. erecta, Fonsecaea erecta V. A. Vicente, Najafzadeh, Sun & de Hoog 2013, Fonsecaea sp. RG-2013a
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