STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGX02067.1Isochorismatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (187 aa)    
Predicted Functional Partners:
AGX02066.1
Spore germination protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.724
AGX04526.1
Isochorismatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.675
tadA
Adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.601
AGX02347.1
Isochorismatase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.465
AGX01964.1
Deoxyadenosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.462
AGX02065.1
Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.462
AGX04390.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.430
AGX03234.1
Regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.428
AGX02692.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.423
Your Current Organism:
Bacillus infantis
NCBI taxonomy Id: 1367477
Other names: B. infantis NRRL B-14911, Bacillus infantis NRRL B-14911
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.