Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AGX02193.1 | AGX02194.1 | N288_01035 | N288_01040 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | RNA polymerase sigma factor SigW; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: this protein is involved in detoxification and protection against antimicrobial; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sigma-70 factor family. ECF subfamily. | 0.518 |
| AGX02193.1 | AGX02195.1 | N288_01035 | N288_01045 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Anti-sigma W factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.500 |
| AGX02194.1 | AGX02193.1 | N288_01040 | N288_01035 | RNA polymerase sigma factor SigW; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: this protein is involved in detoxification and protection against antimicrobial; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.518 |
| AGX02194.1 | AGX02195.1 | N288_01040 | N288_01045 | RNA polymerase sigma factor SigW; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: this protein is involved in detoxification and protection against antimicrobial; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sigma-70 factor family. ECF subfamily. | Anti-sigma W factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.996 |
| AGX02194.1 | AGX02197.1 | N288_01040 | N288_01055 | RNA polymerase sigma factor SigW; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: this protein is involved in detoxification and protection against antimicrobial; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.589 |
| AGX02194.1 | dacA | N288_01040 | N288_01050 | RNA polymerase sigma factor SigW; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: this protein is involved in detoxification and protection against antimicrobial; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sigma-70 factor family. ECF subfamily. | Membrane protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | 0.589 |
| AGX02194.1 | glmM | N288_01040 | N288_01060 | RNA polymerase sigma factor SigW; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: this protein is involved in detoxification and protection against antimicrobial; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sigma-70 factor family. ECF subfamily. | Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family. | 0.523 |
| AGX02194.1 | rpoC | N288_01040 | N288_00710 | RNA polymerase sigma factor SigW; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: this protein is involved in detoxification and protection against antimicrobial; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sigma-70 factor family. ECF subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.412 |
| AGX02195.1 | AGX02193.1 | N288_01045 | N288_01035 | Anti-sigma W factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.500 |
| AGX02195.1 | AGX02194.1 | N288_01045 | N288_01040 | Anti-sigma W factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | RNA polymerase sigma factor SigW; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: this protein is involved in detoxification and protection against antimicrobial; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sigma-70 factor family. ECF subfamily. | 0.996 |
| AGX02195.1 | AGX02197.1 | N288_01045 | N288_01055 | Anti-sigma W factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.605 |
| AGX02195.1 | dacA | N288_01045 | N288_01050 | Anti-sigma W factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Membrane protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | 0.605 |
| AGX02195.1 | glmM | N288_01045 | N288_01060 | Anti-sigma W factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family. | 0.559 |
| AGX02197.1 | AGX02194.1 | N288_01055 | N288_01040 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | RNA polymerase sigma factor SigW; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: this protein is involved in detoxification and protection against antimicrobial; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sigma-70 factor family. ECF subfamily. | 0.589 |
| AGX02197.1 | AGX02195.1 | N288_01055 | N288_01045 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Anti-sigma W factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.605 |
| AGX02197.1 | dacA | N288_01055 | N288_01050 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Membrane protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | 0.957 |
| AGX02197.1 | glmM | N288_01055 | N288_01060 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family. | 0.773 |
| dacA | AGX02194.1 | N288_01050 | N288_01040 | Membrane protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | RNA polymerase sigma factor SigW; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: this protein is involved in detoxification and protection against antimicrobial; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sigma-70 factor family. ECF subfamily. | 0.589 |
| dacA | AGX02195.1 | N288_01050 | N288_01045 | Membrane protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | Anti-sigma W factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.605 |
| dacA | AGX02197.1 | N288_01050 | N288_01055 | Membrane protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.957 |
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