STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGX02618.1Squalene-hopene cyclase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (628 aa)    
Predicted Functional Partners:
AGX06137.1
Fatty acid hydroxylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.852
AGX04507.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.619
AGX02703.1
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  
 0.604
AGX04525.1
Cytochrome P450; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the cytochrome P450 family.
 
 
 0.597
AGX02575.1
NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.572
AGX03400.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.549
AGX02537.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.534
AGX02472.1
Cytochrome P450; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.527
AGX02617.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.524
AGX04830.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.438
Your Current Organism:
Bacillus infantis
NCBI taxonomy Id: 1367477
Other names: B. infantis NRRL B-14911, Bacillus infantis NRRL B-14911
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