STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGX03109.1Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the Fur family. (145 aa)    
Predicted Functional Partners:
AGX05195.1
Manganese ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.817
AGX03107.1
3-phosphoglycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
    0.703
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.697
AGX04267.1
CoA-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.685
AGX02448.1
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  
 0.601
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.591
clpP
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
  
  
 0.562
clpP-2
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
  
  
 0.562
AGX03108.1
ATP:cob(I)alamin adenosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.550
AGX02678.1
Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.540
Your Current Organism:
Bacillus infantis
NCBI taxonomy Id: 1367477
Other names: B. infantis NRRL B-14911, Bacillus infantis NRRL B-14911
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