Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGX03286.1 | yhaM | N288_06775 | N288_06780 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 3'-5' exoribonuclease; Shows a 3'-5' exoribonuclease activity. | 0.548 |
AGX03288.1 | yhaM | N288_06785 | N288_06780 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 3'-5' exoribonuclease; Shows a 3'-5' exoribonuclease activity. | 0.438 |
recU | yhaM | N288_16830 | N288_06780 | Recombinase RecU; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family. | 3'-5' exoribonuclease; Shows a 3'-5' exoribonuclease activity. | 0.463 |
rny | yhaM | N288_10140 | N288_06780 | Ribonuclease; Endoribonuclease that initiates mRNA decay. | 3'-5' exoribonuclease; Shows a 3'-5' exoribonuclease activity. | 0.432 |
yhaM | AGX03286.1 | N288_06780 | N288_06775 | 3'-5' exoribonuclease; Shows a 3'-5' exoribonuclease activity. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.548 |
yhaM | AGX03288.1 | N288_06780 | N288_06785 | 3'-5' exoribonuclease; Shows a 3'-5' exoribonuclease activity. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.438 |
yhaM | recU | N288_06780 | N288_16830 | 3'-5' exoribonuclease; Shows a 3'-5' exoribonuclease activity. | Recombinase RecU; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family. | 0.463 |
yhaM | rny | N288_06780 | N288_10140 | 3'-5' exoribonuclease; Shows a 3'-5' exoribonuclease activity. | Ribonuclease; Endoribonuclease that initiates mRNA decay. | 0.432 |