STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGX03728.1Regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0342 family. (146 aa)    
Predicted Functional Partners:
AGX03953.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0342 family.
  
 
 
 0.963
AGX03707.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0358 family.
 
     0.788
AGX03729.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.778
AGX05870.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0354 family.
  
     0.713
AGX02081.1
Stage 0 sporulation protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.668
AGX05332.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.649
AGX03727.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.639
AGX03082.1
Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.625
AGX06081.1
Thioredoxin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.581
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.580
Your Current Organism:
Bacillus infantis
NCBI taxonomy Id: 1367477
Other names: B. infantis NRRL B-14911, Bacillus infantis NRRL B-14911
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.