Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AGX04129.1 | AGX04130.1 | N288_11090 | N288_11095 | Serine dehydratase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Serine dehydratase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the iron-sulfur dependent L-serine dehydratase family. | 0.999 |
| AGX04129.1 | glyA | N288_11090 | N288_23760 | Serine dehydratase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.948 |
| AGX04129.1 | ilvA | N288_11090 | N288_16335 | Serine dehydratase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.930 |
| AGX04129.1 | trpA | N288_11090 | N288_15600 | Serine dehydratase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.907 |
| AGX04129.1 | trpB | N288_11090 | N288_15605 | Serine dehydratase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.900 |
| AGX04130.1 | AGX04129.1 | N288_11095 | N288_11090 | Serine dehydratase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Serine dehydratase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the iron-sulfur dependent L-serine dehydratase family. | 0.999 |
| AGX04130.1 | glyA | N288_11095 | N288_23760 | Serine dehydratase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.948 |
| AGX04130.1 | ilvA | N288_11095 | N288_16335 | Serine dehydratase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.929 |
| AGX04130.1 | trpA | N288_11095 | N288_15600 | Serine dehydratase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.907 |
| AGX04130.1 | trpB | N288_11095 | N288_15605 | Serine dehydratase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the iron-sulfur dependent L-serine dehydratase family. | Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.900 |
| AGX05735.1 | AGX05736.1 | N288_19285 | N288_19290 | Acetolactate synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.999 |
| AGX05735.1 | AGX06041.1 | N288_19285 | N288_20975 | Acetolactate synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. | 0.755 |
| AGX05735.1 | ilvA | N288_19285 | N288_16335 | Acetolactate synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.984 |
| AGX05735.1 | ilvD | N288_19285 | N288_16445 | Acetolactate synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Dihydroxy-acid dehydratase; Catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the IlvD/Edd family. | 0.949 |
| AGX05735.1 | leuB | N288_19285 | N288_19270 | Acetolactate synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.997 |
| AGX05735.1 | trpA | N288_19285 | N288_15600 | Acetolactate synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.436 |
| AGX05735.1 | trpB | N288_19285 | N288_15605 | Acetolactate synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.450 |
| AGX05736.1 | AGX05735.1 | N288_19290 | N288_19285 | Catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Acetolactate synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.999 |
| AGX05736.1 | AGX06041.1 | N288_19290 | N288_20975 | Catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. | 0.639 |
| AGX05736.1 | ilvA | N288_19290 | N288_16335 | Catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.978 |
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