STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGX05367.1Stage V sporulation protein AE; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (191 aa)    
Predicted Functional Partners:
AGX05366.1
Stage V sporulation protein AF; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.896
AGX05368.1
Stage V sporulation protein AB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.851
AGX05369.1
Stage V sporulation protein AA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.779
AGX03486.1
Stage V sporulation protein AC; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.688
AGX03487.1
SpoVAD; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.638
AGX02671.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.610
AGX03256.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.532
AGX05831.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.516
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.509
AGX05370.1
RNA polymerase sigma70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.502
Your Current Organism:
Bacillus infantis
NCBI taxonomy Id: 1367477
Other names: B. infantis NRRL B-14911, Bacillus infantis NRRL B-14911
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