STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGX05606.1Hypothetical protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (240 aa)    
Predicted Functional Partners:
AGX05299.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.770
AGX05440.1
Peptidase S55; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   
 0.770
AGX03488.1
Stage V sporulation protein AEB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.764
AGX03487.1
SpoVAD; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.762
AGX03486.1
Stage V sporulation protein AC; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.758
AGX06551.1
Stage III sporulation protein D; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   
 0.757
spoIIAB
ATPase; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
 
   
 0.751
AGX02108.1
Stage V sporulation protein T; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.748
AGX03773.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.741
AGX02112.1
Spore coat protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.739
Your Current Organism:
Bacillus infantis
NCBI taxonomy Id: 1367477
Other names: B. infantis NRRL B-14911, Bacillus infantis NRRL B-14911
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.