AGX06351.1 protein (Bacillus infantis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGX06351.1

Manganese transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (415 aa)

Predicted Functional Partners:

AGX05194.1

0.850

AGX06353.1

0.845

AGX06352.1

0.842

AGX05195.1

0.825

AGX05196.1

0.780

AGX05197.1

0.656

AGX06355.1

0.653

AGX06354.1

0.611

AGX05538.1

0.605

AGX06363.1

0.576

Your Current Organism:

Bacillus infantis

NCBI taxonomy Id: 1367477
Other names: B. infantis NRRL B-14911, Bacillus infantis NRRL B-14911

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGX05194.1	AGX05195.1	N288_16530	N288_16535	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Manganese ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.991
AGX05194.1	AGX05196.1	N288_16530	N288_16540	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Manganese ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AGX05194.1	AGX05197.1	N288_16530	N288_16545	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial solute-binding protein 9 family.	0.999
AGX05194.1	AGX05538.1	N288_16530	N288_18280	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.536
AGX05194.1	AGX06351.1	N288_16530	N288_22560	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Manganese transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.850
AGX05195.1	AGX05194.1	N288_16535	N288_16530	Manganese ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.991
AGX05195.1	AGX05196.1	N288_16535	N288_16540	Manganese ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Manganese ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AGX05195.1	AGX05197.1	N288_16535	N288_16545	Manganese ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial solute-binding protein 9 family.	0.998
AGX05195.1	AGX05538.1	N288_16535	N288_18280	Manganese ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.664
AGX05195.1	AGX06351.1	N288_16535	N288_22560	Manganese ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Manganese transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.825
AGX05196.1	AGX05194.1	N288_16540	N288_16530	Manganese ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AGX05196.1	AGX05195.1	N288_16540	N288_16535	Manganese ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Manganese ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AGX05196.1	AGX05197.1	N288_16540	N288_16545	Manganese ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial solute-binding protein 9 family.	0.999
AGX05196.1	AGX05538.1	N288_16540	N288_18280	Manganese ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.935
AGX05196.1	AGX06351.1	N288_16540	N288_22560	Manganese ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Manganese transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.780
AGX05197.1	AGX05194.1	N288_16545	N288_16530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial solute-binding protein 9 family.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AGX05197.1	AGX05195.1	N288_16545	N288_16535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial solute-binding protein 9 family.	Manganese ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.998
AGX05197.1	AGX05196.1	N288_16545	N288_16540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial solute-binding protein 9 family.	Manganese ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AGX05197.1	AGX05538.1	N288_16545	N288_18280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial solute-binding protein 9 family.	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.922
AGX05197.1	AGX06351.1	N288_16545	N288_22560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the bacterial solute-binding protein 9 family.	Manganese transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.656