Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKK07948.1Hypothetical protein. (253 aa)    
Predicted Functional Partners:
AKK07947.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 
 0.980
AKK09741.1
Hypothetical protein.
 
 
 
 0.790
AKK08779.1
Hypothetical protein.
 
 
 
 0.788
AKK09900.1
Septum formation.
  
    0.777
AKK09795.1
Hypothetical protein.
  
     0.774
AKK08103.1
Hypothetical protein.
  
   
 0.773
AKK09507.1
Hypothetical protein.
  
     0.773
AKK09775.1
LytR cell envelope-related transcriptional attenuator.
  
     0.773
AKK09541.1
Putative DUF3618 family protein.
  
     0.772
AKK07819.1
Hypothetical protein.
  
     0.771
Your Current Organism:
Corynebacterium testudinoris
NCBI taxonomy Id: 136857
Other names: C. testudinoris, CCUG 41823, CIP 106763, Corynebacterium testudinoris Collns et al. 2001, DSM 44614, JCM 12108, strain M935/96/4
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