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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV96_00409Pilus assembly protein TadC. (294 aa)    
Predicted Functional Partners:
BV96_00408
Type II secretion system F domain protein precursor.
 
  
 0.989
BV96_00404
Flp pilus assembly protein CpaB.
 
  
 0.985
BV96_00407
TadA ATPase.
 
  
 0.981
BV96_00406
Response regulator receiver protein.
 
  
 0.978
BV96_00405
Flp pilus assembly protein secretin CpaC; Belongs to the bacterial secretin family.
 
  
 0.972
BV96_00410
Flp pilus assembly protein TadD precursor.
 
  
 0.959
BV96_01272
Tight adherence protein B.
 
  
 0.942
BV96_01276
Flp pilus assembly protein CpaB.
 
  
 0.923
BV96_01273
Flp pilus assembly protein ATPase CpaE.
 
  
 0.918
BV96_00412
Membrane protein.
 
  
 0.903
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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