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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV96_00537Putative membrane protein. (239 aa)    
Predicted Functional Partners:
BV96_00533
Putative cytochrome c oxidase subunit II.
 
  
 0.916
BV96_00536
Cytochrome B561.
       0.861
BV96_00534
Cytochrome c oxidase polypeptide II.
 
  
 0.838
BV96_02383
Putative membrane protein.
 
     0.778
BV96_02382
Membrane protein.
 
     0.777
ctaD
Cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
    0.764
coxB
Cytochrome c oxidase subunit II.
 
    0.738
BV96_00532
Cytochrome B561; Belongs to the heme-copper respiratory oxidase family.
 
    0.712
BV96_00538
Putative regulatory protein associated with the ectoine operon.
       0.586
BV96_00551
Putative cytochrome c oxidase subunit II.
  
  
 0.438
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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