Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BV96_00559C(7)-type cytochrome triheme domain protein. (197 aa)    
Predicted Functional Partners:
BV96_00558
Hypothetical protein.
 
 
 
 0.996
BV96_00551
Putative cytochrome c oxidase subunit II.
 
 
 0.993
BV96_00557
Formate-dependent nitrite reductase, membrane component.
 
 
 
 0.988
BV96_00554
Hypothetical protein.
 
   0.985
BV96_00556
Hypothetical protein.
 
 
   0.981
BV96_00555
Putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c.
 
 
   0.979
BV96_00549
Hypothetical protein.
 
 0.974
BV96_00552
Hypothetical protein.
 
     0.955
BV96_00533
Putative cytochrome c oxidase subunit II.
 
 0.953
BV96_00550
Cytochrome c oxidase polypeptide I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
  0.949
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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