Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BV96_00580Protein putatively expressed under hydrogen peroxide-induction; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
BV96_00577
Formate dehydrogenase subunit alpha.
 
     0.784
fdhD
Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
     0.771
BV96_00579
ATP synthase subunit E.
 
     0.763
BV96_00578
Formate dehydrogenase subunit beta.
 
     0.760
BV96_00576
NAD-dependent formate dehydrogenase delta subunit.
 
     0.745
BV96_03015
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.666
BV96_00116
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.628
BV96_02921
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.617
BV96_01662
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.589
BV96_00581
Transcriptional regulator, MarR family.
       0.580
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.