Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BV96_00635 | BV96_00636 | BV96_00635 | BV96_00636 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Ornithine cyclodeaminase. | 0.788 |
BV96_00635 | BV96_00941 | BV96_00635 | BV96_00941 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Homoserine dehydrogenase. | 0.771 |
BV96_00635 | BV96_01896 | BV96_00635 | BV96_01896 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Chorismate mutase. | 0.558 |
BV96_00635 | BV96_03783 | BV96_00635 | BV96_03783 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Chorismate mutase I. | 0.558 |
BV96_00635 | asd | BV96_00635 | BV96_01740 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.892 |
BV96_00635 | dapA | BV96_00635 | BV96_01007 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | 4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.730 |
BV96_00635 | dapB | BV96_00635 | BV96_02676 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | 4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.926 |
BV96_00635 | gabD | BV96_00635 | BV96_00634 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Succinate-semialdehyde dehdyrogenase; Belongs to the aldehyde dehydrogenase family. | 0.812 |
BV96_00635 | gatC | BV96_00635 | BV96_01913 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.594 |
BV96_00635 | rpsO | BV96_00635 | BV96_01601 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.562 |
BV96_00636 | BV96_00635 | BV96_00636 | BV96_00635 | Ornithine cyclodeaminase. | Dihydrodipicolinate synthetase; Belongs to the DapA family. | 0.788 |
BV96_00636 | gabD | BV96_00636 | BV96_00634 | Ornithine cyclodeaminase. | Succinate-semialdehyde dehdyrogenase; Belongs to the aldehyde dehydrogenase family. | 0.769 |
BV96_00941 | BV96_00635 | BV96_00941 | BV96_00635 | Homoserine dehydrogenase. | Dihydrodipicolinate synthetase; Belongs to the DapA family. | 0.771 |
BV96_00941 | asd | BV96_00941 | BV96_01740 | Homoserine dehydrogenase. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.986 |
BV96_00941 | dapA | BV96_00941 | BV96_01007 | Homoserine dehydrogenase. | 4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.929 |
BV96_00941 | dapB | BV96_00941 | BV96_02676 | Homoserine dehydrogenase. | 4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.626 |
BV96_01896 | BV96_00635 | BV96_01896 | BV96_00635 | Chorismate mutase. | Dihydrodipicolinate synthetase; Belongs to the DapA family. | 0.558 |
BV96_01896 | dapA | BV96_01896 | BV96_01007 | Chorismate mutase. | 4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.558 |
BV96_01896 | rpsO | BV96_01896 | BV96_01601 | Chorismate mutase. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.616 |
BV96_03783 | BV96_00635 | BV96_03783 | BV96_00635 | Chorismate mutase I. | Dihydrodipicolinate synthetase; Belongs to the DapA family. | 0.558 |
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