STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BV96_00637Transcriptional regulator, GntR family. (223 aa)    
Predicted Functional Partners:
BV96_03679
GntR family transcriptional regulator.
  
     0.754
BV96_01410
GntR family transcriptional regulator.
  
  
 0.662
BV96_02294
Hypothetical protein.
  
  
 0.548
BV96_00636
Ornithine cyclodeaminase.
  
    0.540
BV96_00635
Dihydrodipicolinate synthetase; Belongs to the DapA family.
     
 0.508
gabD
Succinate-semialdehyde dehdyrogenase; Belongs to the aldehyde dehydrogenase family.
       0.498
BV96_00511
Transcriptional regulator, IclR family precursor.
  
  
 0.474
BV96_00638
Glycine cleavage T protein (Aminomethyl transferase); Belongs to the GcvT family.
       0.453
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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