Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BV96_01206Family finger-like protein. (285 aa)    
Predicted Functional Partners:
BV96_01204
Putative uncharacterized protein precursor; Overlaps another CDS with the same product name.
 
     0.818
BV96_01202
1-acyl-sn-glycerol-3-phosphate acyltransferase.
       0.697
BV96_01203
Putative uncharacterized protein precursor; Overlaps another CDS with the same product name.
       0.697
ftsE
Cell division protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
       0.697
BV96_02598
Exoprotein.
  
     0.669
BV96_01314
Sporulation domain-containing protein precursor.
  
     0.582
BV96_01937
Hypothetical protein.
  
     0.571
BV96_02601
ATP synthase I.
  
     0.559
BV96_00806
Hypothetical protein.
  
    0.550
BV96_01687
Sporulation domain-containing protein precursor.
  
     0.541
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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