Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BV96_01391Indolepyruvate ferredoxin oxidoreductase. (709 aa)    
Predicted Functional Partners:
BV96_01390
Indolepyruvate oxidoreductase subunit B.
 
 
 0.978
BV96_01392
Cyclase family protein.
 
     0.959
BV96_01393
MarR family transcriptional regulator.
 
     0.825
BV96_01099
Glutamate synthase, small subunit.
   
 
 0.819
BV96_01394
Salicylyl-CoA 5-hydroxylase.
 
   
 0.776
BV96_00579
ATP synthase subunit E.
   
 
 0.771
BV96_03110
NADH dehydrogenase.
   
 
 0.771
BV96_00769
Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
   
 
 0.739
BV96_03814
NagC family transcriptional regulator.
   
 
 0.739
BV96_00577
Formate dehydrogenase subunit alpha.
   
 
 0.738
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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