Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BV96_00443 | BV96_01414 | BV96_00443 | BV96_01414 | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. | Protein-L-isoaspartate O-methyltransferase. | 0.712 |
BV96_00443 | BV96_02385 | BV96_00443 | BV96_02385 | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. | Glycosyl hydrolases 15 family protein. | 0.735 |
BV96_00443 | BV96_02629 | BV96_00443 | BV96_02629 | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. | Glycoside hydrolase 15-related protein. | 0.735 |
BV96_01414 | BV96_00443 | BV96_01414 | BV96_00443 | Protein-L-isoaspartate O-methyltransferase. | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. | 0.712 |
BV96_01414 | BV96_01415 | BV96_01414 | BV96_01415 | Protein-L-isoaspartate O-methyltransferase. | Membrane protein. | 0.782 |
BV96_01414 | BV96_01416 | BV96_01414 | BV96_01416 | Protein-L-isoaspartate O-methyltransferase. | Hypothetical protein. | 0.778 |
BV96_01414 | BV96_02385 | BV96_01414 | BV96_02385 | Protein-L-isoaspartate O-methyltransferase. | Glycosyl hydrolases 15 family protein. | 0.767 |
BV96_01414 | BV96_02629 | BV96_01414 | BV96_02629 | Protein-L-isoaspartate O-methyltransferase. | Glycoside hydrolase 15-related protein. | 0.767 |
BV96_01414 | fliG | BV96_01414 | BV96_00703 | Protein-L-isoaspartate O-methyltransferase. | Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.694 |
BV96_01414 | ispE | BV96_01414 | BV96_01694 | Protein-L-isoaspartate O-methyltransferase. | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.608 |
BV96_01414 | nuoN | BV96_01414 | BV96_03101 | Protein-L-isoaspartate O-methyltransferase. | NADH-quinone oxidoreductase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. | 0.466 |
BV96_01414 | tonB_1 | BV96_01414 | BV96_01417 | Protein-L-isoaspartate O-methyltransferase. | TonB-like protein. | 0.450 |
BV96_01414 | valS | BV96_01414 | BV96_01418 | Protein-L-isoaspartate O-methyltransferase. | Valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.486 |
BV96_01415 | BV96_01414 | BV96_01415 | BV96_01414 | Membrane protein. | Protein-L-isoaspartate O-methyltransferase. | 0.782 |
BV96_01415 | BV96_01416 | BV96_01415 | BV96_01416 | Membrane protein. | Hypothetical protein. | 0.691 |
BV96_01415 | tonB_1 | BV96_01415 | BV96_01417 | Membrane protein. | TonB-like protein. | 0.469 |
BV96_01415 | valS | BV96_01415 | BV96_01418 | Membrane protein. | Valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.505 |
BV96_01416 | BV96_01414 | BV96_01416 | BV96_01414 | Hypothetical protein. | Protein-L-isoaspartate O-methyltransferase. | 0.778 |
BV96_01416 | BV96_01415 | BV96_01416 | BV96_01415 | Hypothetical protein. | Membrane protein. | 0.691 |
BV96_01416 | tonB_1 | BV96_01416 | BV96_01417 | Hypothetical protein. | TonB-like protein. | 0.570 |
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