BV96_01818 protein (Sphingomonas paucimobilis)

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BV96_01818

ABC transporter ATP-binding protein. (561 aa)

Predicted Functional Partners:

rpmE

0.811

rpsP

0.804

rplU

0.799

rpmB

0.796

rplT

0.794

rpsC

0.791

rpmD

0.788

rpsO

0.788

rpmH

0.787

rplC

0.784

Your Current Organism:

Sphingomonas paucimobilis

NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BV96_01818	rplC	BV96_01818	BV96_01044	ABC transporter ATP-binding protein.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.784
BV96_01818	rplT	BV96_01818	BV96_01192	ABC transporter ATP-binding protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.794
BV96_01818	rplU	BV96_01818	BV96_03768	ABC transporter ATP-binding protein.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.799
BV96_01818	rpmB	BV96_01818	BV96_00823	ABC transporter ATP-binding protein.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.796
BV96_01818	rpmD	BV96_01818	BV96_01026	ABC transporter ATP-binding protein.	50S ribosomal protein L30.	0.788
BV96_01818	rpmE	BV96_01818	BV96_01561	ABC transporter ATP-binding protein.	50S ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.811
BV96_01818	rpmH	BV96_01818	BV96_00911	ABC transporter ATP-binding protein.	50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.787
BV96_01818	rpsC	BV96_01818	BV96_01038	ABC transporter ATP-binding protein.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.791
BV96_01818	rpsO	BV96_01818	BV96_01601	ABC transporter ATP-binding protein.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.788
BV96_01818	rpsP	BV96_01818	BV96_03789	ABC transporter ATP-binding protein.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.804
rplC	BV96_01818	BV96_01044	BV96_01818	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	ABC transporter ATP-binding protein.	0.784
rplC	rplT	BV96_01044	BV96_01192	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.993
rplC	rplU	BV96_01044	BV96_03768	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.992
rplC	rpmB	BV96_01044	BV96_00823	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.989
rplC	rpmD	BV96_01044	BV96_01026	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L30.	0.997
rplC	rpmE	BV96_01044	BV96_01561	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.915
rplC	rpmH	BV96_01044	BV96_00911	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.946
rplC	rpsC	BV96_01044	BV96_01038	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.998
rplC	rpsO	BV96_01044	BV96_01601	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.990
rplC	rpsP	BV96_01044	BV96_03789	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.990

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