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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV96_02258Xre-family transcriptional regulator. (227 aa)    
Predicted Functional Partners:
traW_1
Conjugal transfer protein TraW.
  
     0.698
BV96_03432
Type IV secretory protein VirD4.
  
     0.689
BV96_03431
Exonuclease V subunit alpha.
  
     0.670
BV96_02571
Putative uncharacterized protein precursor.
  
     0.660
traW_2
Conjugal transfer protein TraW.
  
     0.660
traN_1
Conjugal transfer protein TraN.
  
     0.653
BV96_03307
Thioredoxin-like protein.
  
     0.645
BV96_02567
Thioredoxin.
  
     0.643
traN_2
Mating pair stabilization protein TraN.
  
     0.639
BV96_03513
Conjugal transfer protein TraN.
  
     0.625
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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