STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BV96_02387Short chain dehydrogenase family protein. (333 aa)    
Predicted Functional Partners:
BV96_02391
Thiamine pyrophosphate protein; Belongs to the TPP enzyme family.
 
     0.910
BV96_02389
Hypothetical protein.
 
     0.867
BV96_02390
Hypothetical protein.
 
     0.854
BV96_02385
Glycosyl hydrolases 15 family protein.
 
     0.848
BV96_02388
Choline dehydrogenase.
 
     0.846
BV96_02383
Putative membrane protein.
       0.773
BV96_02384
Cytochrome c oxidase caa3 assembly factor family protein.
       0.773
BV96_02386
Alpha-glucosidase.
       0.773
treY
Malto-oligosyltrehalose synthase.
  
     0.531
BV96_02392
L-lactate dehydrogenase.
       0.479
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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