STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BV96_024133-deoxy-manno-octulosonate cytidylyltransferase. (235 aa)    
Predicted Functional Partners:
BV96_02412
KpsF/GutQ; Belongs to the SIS family. GutQ/KpsF subfamily.
 
   
 0.958
BV96_02414
Fructose-2,6-bisphosphatase.
 
     0.911
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase; Belongs to the KdsA family.
 
   
 0.895
BV96_00457
ABC transporter ATP-binding protein.
 
   
 0.658
BV96_02553
Putative ABC transporter ATP-binding protein.
 
   
 0.626
BV96_02213
Biopolymer transporter ExbB.
 
     0.611
BV96_01849
Lipid A biosynthesis acyltransferase.
 
   
 0.598
BV96_03818
Capsule polysaccharide export protein precursor.
 
   
 0.580
BV96_02289
Cyanophycin synthetase; Belongs to the MurCDEF family.
     
 0.556
BV96_02523
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
     
 0.549
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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