STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BV96_02459Acetylglucosamine-6-sulfatase. (589 aa)    
Predicted Functional Partners:
BV96_00354
Sulfatase-modifying factor 1.
 
 
   0.896
BV96_02461
Sulfatase precursor.
 
    
0.622
BV96_00897
Hypothetical protein.
   
   0.598
BV96_02462
Choline-sulfatase.
 
    
0.592
BV96_02460
Transcriptional regulator.
       0.544
BV96_00048
Beta-lactamase-like protein precursor.
  
   
 0.504
rhaM_1
Alpha-L-rhamnosidase.
  
     0.483
rhaM_2
Alpha-L-rhamnosidase.
  
     0.473
BV96_02458
Putative TonB-dependent receptor.
       0.460
BV96_00275
Bacterial alpha-L-rhamnosidase.
 
     0.408
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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