STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BV96_02813Secretion system type I outer membrane efflux pump lipoprotein NodT. (475 aa)    
Predicted Functional Partners:
BV96_02812
Cobalt/zinc/cadmium resistance heavy metal efflux pump protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
   0.838
BV96_02811
RND efflux membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.831
BV96_02814
Hypothetical protein.
       0.773
BV96_02666
Hemolysin D; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.769
BV96_02807
Secretion protein HylD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.754
BV96_02806
Transporter.
   0.722
BV96_02667
Multidrug transporter.
  
   0.718
BV96_02803
Secretion protein HlyD family protein precursor.
 
   0.645
BV96_00776
Hemolysin D.
 
   0.621
BV96_04296
RND transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.524
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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