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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV96_02936Putative iron-sulfur protein. (351 aa)    
Predicted Functional Partners:
BV96_02934
Putative iron-sulfur protein.
 
  
 
0.734
BV96_02935
Azu1 pseudoazurin (Blue copper protein).
       0.588
BV96_04288
Flavodoxin.
    
 0.532
BV96_02937
Major facilitator superfamily protein.
       0.492
BV96_02969
Rieske (2Fe-2S) domain protein.
  
  
 
0.443
BV96_00660
Putative iron-sulfur protein.
  
  
 
0.441
BV96_02892
Vanillate monooxygenase.
  
  
 
0.436
BV96_02297
(2Fe-2S)-binding protein.
  
  
 
0.426
BV96_04686
Hypothetical protein.
  
     0.425
BV96_02305
Rieske (2Fe-2S) domain protein.
  
  
 
0.424
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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