STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BV96_03074TonB-denpendent receptor. (896 aa)    
Predicted Functional Partners:
BV96_03075
Hypothetical protein.
 
   
 0.940
BV96_02338
TonB-dependent receptor-like protein.
  
     0.666
BV96_03071
Secretion system protein C.
 
   
 0.632
BV96_02005
Putative uncharacterized protein precursor.
  
     0.623
BV96_02015
TonB-denpendent receptor.
  
     0.619
BV96_01444
Putative uncharacterized protein precursor.
  
     0.607
pulI
Type II secretory pathway component PulI.
 
     0.588
BV96_03064
General secretion pathway protein J.
 
     0.582
BV96_03063
Type II secretion system protein K.
 
     0.581
BV96_02483
TonB-denpendent receptor.
  
     0.580
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.