STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BV96_03301Conjugal transfer protein. (339 aa)    
Predicted Functional Partners:
traW_2
Conjugal transfer protein TraW.
 
     0.961
traC
Type IV secretory pathway VirB4 component.
 
     0.956
BV96_03307
Thioredoxin-like protein.
 
     0.947
traN_2
Mating pair stabilization protein TraN.
 
     0.946
BV96_03295
IncF plasmid conjugative transfer pilus assembly protein TraB.
 
     0.920
BV96_03309
Sex pilus assembly protein TraH.
 
   
 0.849
BV96_03511
TraF-like protein.
 
     0.781
BV96_03517
Conjugal transfer protein TraW.
 
     0.781
traW_3
Sex pilus assembly and synthesis protein.
 
     0.781
traF_3
Pilus assembly and synthesis protein.
 
     0.781
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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