Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BV96_03360Citrate lyase; Belongs to the HpcH/HpaI aldolase family. (276 aa)    
Predicted Functional Partners:
BV96_03359
MaoC family dehydratase.
 
  
 0.963
BV96_03358
3-methylcrotonyl-CoA carboxylase subunit alpha.
 
    0.881
BV96_03356
Isovaleryl-CoA dehydrogenase.
  
    0.852
BV96_03357
Acetyl-CoA carboxylase subunit beta.
     
 0.845
BV96_02819
Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase.
   
    0.843
BV96_00355
Hypothetical protein.
  
  
 0.679
BV96_01343
Citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.623
BV96_00983
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.537
BV96_01726
Putative methylmalonyl-CoA mutase.
     
 0.483
BV96_03355
Transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family.
       0.442
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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