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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV96_03403Photopigment and puc expression activator. (133 aa)    
Predicted Functional Partners:
BV96_01423
Hpt domain-containing protein.
  
 0.924
BV96_03673
Histidine kinase.
  
 0.906
BV96_01610
Histidine kinase.
  
 0.868
BV96_04697
Diguanylate cyclase/phosphodiesterase with pas/pac and mhyt sensor(S).
  
 0.862
BV96_00779
LuxR family transcriptional regulator.
  
 0.797
BV96_00945
Diguanylate cyclase with PAS/PAC sensor.
  
 0.768
BV96_00299
Sensory box protein.
  
 0.756
BV96_00470
PAS sensor protein.
  
 0.756
BV96_03927
PAS sensor protein.
  
 0.756
BV96_03805
Chemotaxis protein CheA.
  
 
 0.706
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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